Preprocess and perform quality assessment of one or more SVS data sets.

Usage

preproc_svs_dataset(
  paths,
  labels = NULL,
  output_dir = "spant_analysis",
  exclude_labels = NULL,
  overwrite = FALSE,
  ref_inds = NULL,
  dyn_water_ref_paths = NULL,
  Ntrans = NULL,
  TR = NULL,
  return_results = FALSE
)

Arguments

paths: paths to the MRS data file or IMA directory.
labels: labels to describe each data set.
output_dir: output directory.
exclude_labels: vector of labels of scans to exclude, eg poor quality data.
overwrite: overwrite saved results, defaults to FALSE.
ref_inds: a vector of 1-based indices for any water reference dynamic scans.
dyn_water_ref_paths: paths to interleaved water reference scans.
Ntrans: override the number of transients set in the mrs_data file.
TR: override the TR (in seconds) set in the mrs_data file.
return_results: function will return key outputs, defaults to FALSE.